gmoviz: Seamless visualization of complex genomic variations in GMOs and edited cell lines

gmoviz is an R package designed to extend traditional bioinformatics workflows used for genomic characterisation with powerful visualisation capabilities based on the Circos [@Krzywinski_2009] plotting framework.

Developers

• gmoviz is developed by Kathleen Zeglinski during her UROP placement at CSL Research

• Scientific supervision: Monther Alhamdoosh and Arthur Hsu

• Software Engineering: Constantinos Koutsakis

• For comments and suggestions, email monther.alhamdoosh <at> csl <dot> com <dot> au

Installation

System requirements

Installation

As soon as gmoviz is available in the Bioconductor project, it can be installed from R console as follows:

if (!require("BiocManager"))
    install.packages("BiocManager")
BiocManager::install("gmoviz")

Quick start

Features

Additional plots along with documentation can be found in gmoviz's main vignette.

In R console, type:

browseVignettes("gmoviz")