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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "glycoTraitR" in publications use:'
type: software
license: MIT
title: 'glycoTraitR: Compute and analyze the glycan structrual traits from GPSM data'
version: 1.1.0
doi: 10.32614/CRAN.package.glycoTraitR
abstract: GlycoTraitR is an R package for analyzing glycoproteomics data, particularly
  glycopeptide-spectrum matches (GPSMs). It supports results generated by the pGlyco3
  and Glyco-Decipher search engines. The package parses glycan structures, computes
  monosaccharide compositions and structural traits, and performs differential analysis
  of glycan heterogeneity. It constructs trait-by-PSM matrices stored in a SummarizedExperiment
  object, supports user-defined structural motifs, and provides visualization utilities
  for interpreting glycan trait changes.
authors:
- family-names: Zhang
  given-names: Bingyuan
  email: zhang.bingyuan.w8@f.mail.nagoya-u.ac.jp
  orcid: https://orcid.org/0000-0002-4892-323X
- family-names: Himori
  given-names: Koichi
  email: himori.koichi.b5@f.mail.nagoya-u.ac.jp
- family-names: Matsui
  given-names: Yusuke
  email: matsui.yusuke.d4@f.mail.nagoya-u.ac.jp
repository: https://bioc.r-universe.dev
repository-code: https://github.com/matsui-lab/glycoTraitR
commit: 7775ec53cddacbbe60743778af072b181a33b54e
url: https://github.com/matsui-lab/glycoTraitR
date-released: '2026-04-28'
contact:
- family-names: Zhang
  given-names: Bingyuan
  email: zhang.bingyuan.w8@f.mail.nagoya-u.ac.jp
  orcid: https://orcid.org/0000-0002-4892-323X