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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "glmSparseNet" in publications use:'
type: software
license: GPL-3.0-only
title: 'glmSparseNet: Network Centrality Metrics for Elastic-Net Regularized Models'
version: 1.23.0
abstract: glmSparseNet is an R-package that generalizes sparse regression models when
  the features (e.g. genes) have a graph structure (e.g. protein-protein interactions),
  by including network-based regularizers. glmSparseNet uses the glmnet R-package,
  by including centrality measures of the network as penalty weights in the regularization.
  The current version implements regularization based on node degree, i.e. the strength
  and/or number of its associated edges, either by promoting hubs in the solution
  or orphan genes in the solution. All the glmnet distribution families are supported,
  namely "gaussian", "poisson", "binomial", "multinomial", "cox", and "mgaussian".
authors:
- family-names: Veríssimo
  given-names: André
  email: andre.verissimo@tecnico.ulisboa.pt
  orcid: https://orcid.org/0000-0002-2212-339X
- family-names: Vinga
  given-names: Susana
  email: susanavinga@tecnico.ulisboa.pt
preferred-citation:
  type: article
  title: Sparse network-based regularization for the analysis of patientomics high-dimensional
    survival data
  authors:
  - family-names: Veríssimo
    given-names: André
    email: andre.verissimo@tecnico.ulisboa.pt
    orcid: https://orcid.org/0000-0002-2212-339X
  - family-names: Carrasquinha
    given-names: Eunice
  - family-names: Lopes
    given-names: Marta B.
  - family-names: Oliveira
    given-names: Arlindo L.
  - family-names: Sagot
    given-names: Marie-France
  - family-names: Vinga
    given-names: Susana
    email: susanavinga@tecnico.ulisboa.pt
  journal: bioRxiv
  year: '2018'
repository: https://bioc.r-universe.dev
repository-code: https://www.github.com/sysbiomed/glmSparseNet
url: https://www.github.com/sysbiomed/glmSparseNet
contact:
- family-names: Veríssimo
  given-names: André
  email: andre.verissimo@tecnico.ulisboa.pt
  orcid: https://orcid.org/0000-0002-2212-339X