Package: ggcyto
Type: Package
Title: Visualize Cytometry data with ggplot
Version: 1.41.1
Date: 2015-11-02
Author: Mike Jiang
Maintainer: Mike Jiang <mike@ozette.com>
Description: With the dedicated fortify method implemented for flowSet,
        ncdfFlowSet and GatingSet classes, both raw and gated flow
        cytometry data can be plotted directly with ggplot. ggcyto
        wrapper and some customed layers also make it easy to add gates
        and population statistics to the plot.
VignetteBuilder: knitr
Depends: methods, ggplot2(>= 3.5.0), flowCore(>= 1.41.5), ncdfFlow(>=
        2.17.1), flowWorkspace(>= 4.3.1)
Imports: plyr, scales, hexbin, data.table, RColorBrewer, gridExtra,
        rlang, BiocGenerics (>= 0.59.5)
Suggests: testthat, flowWorkspaceData, knitr, rmarkdown, flowStats,
        openCyto, flowViz, ggridges, vdiffr
License: file LICENSE
URL: https://github.com/RGLab/ggcyto/issues
biocViews: ImmunoOncology, FlowCytometry, CellBasedAssays,
        Infrastructure, Visualization
Collate: 'AllClasses.R' 'autoplot.R' 'axis_inverse_trans.R'
        'compute_stats.R' 'faust_gating_plot.R' 'fortify.R'
        'fortify_fs.R' 'geom_gate.R' 'geom_hvline.R'
        'geom_multi_range.R' 'geom_overlay.R' 'geom_stats.R'
        'getFlowFrame.R' 'ggcyto.R' 'ggcyto_GatingLayout.R'
        'ggcyto_GatingSet.R' 'ggcyto_flowSet.R' 'labs.R' 'ggcyto_par.R'
        'ggplot_data_frame.R' 'merge.quad.gates.R' 'replace_data.R'
        'scales_flowCore_fasinh.R' 'scales_flowJo_biexp.R'
        'scales_flowJo_fasinh.R' 'scales_logicle.R' 'stat_position.R'
        'transform_gate.R' 'utility.R'
RoxygenNote: 7.2.1
Roxygen: list(markdown=TRUE)
Config/pak/sysreqs: libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-27 20:51:51 UTC
RemoteUrl: https://github.com/bioc/ggcyto
RemoteRef: HEAD
RemoteSha: 2484d0d88328e9ff72d36f422dd4eaef9755b571
NeedsCompilation: no
Packaged: 2026-07-03 18:49:06 UTC; root