NEWS
ggbio 1.19.1
NEW FEATURES
- autoplot method supports now EnsDb objects and related filter objects.
ggbio 1.5.16
NEW FEATURES
- ggplot generic method added.
- mold generic method added for molding object to data.frame.
- support ggplot(data) + stat_* style, original data being kept.
- tracks function updated, API is enhenced, utilities could control attributes
of plots and trakcs.
- autoplot now support: VCF, SummarizedExperiments, matrix, where when genomic position is
provided, options to visualize a heatmap sitting on the genomic position.
- theme could define track based themes.
- ideogram: support + xlim method, when embeded with tracks, automatically update zoomed region.
- pheno.plot added to SuumarizedExperiemnts and ExpressionSet.
SIGNIFICANT USER-LEVEL CHANGES
- align.plots is deprecated, alignPlots created
Notes
- updated website for ggbio:
http://tengfei.github.com/ggbio
manuals and vignettes and paper added
ggbio 1.1.8
NEW FEATURES
- create lower level API and rewrite higher level API
- new geom: geom_alignment, geom_chevron, geom_arch, geom_arrow,
geom_arrowrect
- redefined geom: geom_rect, geom_segment
- new stat: stat_aggregate, stat_coverage, stat_mismatch, stat_gene, stat_table,
stat_stepping
- redefined stat: stat_identity
- new layout: layout_circle, layout_karyogram
- tracks function are more smart and with more accessors.
- themes provided.
- More supported object for autoplot: VCF, ExpressionSet, GenomicRangesList.
SIGNIFICANT USER-LEVEL CHANGES
- qplot changed to generic autoplot function.
- argument use only "facets", no alias "facet_gr" or "facet" accepted.
- plotMismatchSum will be replaced by stat_mismatch, or autoplot, BamFile.
Notes
- new website for ggbio:
http://tengfei.github.com/ggbio
hosting docs, tutorials and case study
- pdf version vignette will not longer supported or just provide a short form.