Package: getDEE2
Title: Programmatic access to the DEE2 RNA expression dataset
Version: 1.23.0
Authors@R: c(
    person(given = "Mark",
        family = "Ziemann",
        role = c("aut","cre"),
        email = "mark.ziemann@gmail.com",
        c(ORCID = "0000-0002-7688-6974")),
    person(given="Antony",
        family="Kaspi",
        role = c("aut"),
        c(ORCID = "0000-0001-6576-5862"))
    )
Description: Digital Expression Explorer 2 (or DEE2 for short) is a
        repository of processed RNA-seq data in the form of counts. It
        was designed so that researchers could undertake re-analysis
        and meta-analysis of published RNA-seq studies quickly and
        easily. As of April 2020, over 1 million SRA datasets have been
        processed. This package provides an R interface to access these
        expression data. More information about the DEE2 project can be
        found at the project homepage (http://dee2.io) and main
        publication (https://doi.org/10.1093/gigascience/giz022).
Depends: R (>= 4.4)
Imports: stats, utils, SummarizedExperiment, htm2txt
Suggests: knitr, testthat, rmarkdown
License: GPL-3
Encoding: UTF-8
URL: https://github.com/markziemann/getDEE2
RoxygenNote: 7.1.1
biocViews: GeneExpression, Transcriptomics, Sequencing
VignetteBuilder: knitr
BugReports: https://github.com/markziemann/getDEE2
git_url: https://git.bioconductor.org/packages/getDEE2
git_branch: devel
git_last_commit: a598524
git_last_commit_date: 2024-10-29
NeedsCompilation: no
Packaged: 2026-07-02 09:57:10 UTC; root
Author: Mark Ziemann [aut, cre], Antony Kaspi [aut]
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:52:56 UTC
RemoteUrl: https://github.com/bioc/getDEE2
RemoteRef: HEAD
RemoteSha: aa86defccccad67ec2172409a3edd3c852b58b5d
Maintainer: Mark 0000-0002-7688-6974 Ziemann <mark.ziemann@gmail.com>