Changes in version 1.5.1 IMPROVEMENT o add citation. Changes in version 1.3.21 IMPROVEMENT o improve the reset button for tjviewer Changes in version 1.3.20 IMPROVEMENT o update the documentations in DESCRIPTION. Changes in version 1.3.19 IMPROVEMENT o update the documentations. o add a reset button for tjviewer Changes in version 1.3.17 BUG FIXES o update the author list. Changes in version 1.3.15 NEW FEATURES o view3dStructure for multiple sequences. Changes in version 1.3.14 NEW FEATURES o Add scale bar in threejsViewer. Changes in version 1.3.13 BUG FIXES o Fix the issue for fill_NA if there are multiple NA values in dist matrix. Changes in version 1.3.12 NEW FEATURES o Add function to call TADs and compartments for spatial distance. Changes in version 1.3.11 NEW FEATURES o Add DSDC distance method for cellDistance. Changes in version 1.3.10 IMPROVEMENT o Fix multiple issues for PDF exporter. Changes in version 1.3.9 NEW FEATURES o Add NMI and ARI distance method for cellDistance. Changes in version 1.3.8 IMPROVEMENT o Add lwd controlor for GenomicInteraction links. Changes in version 1.3.7 IMPROVEMENT o Change the default value of normalized for TSS measurement to false. Changes in version 1.3.6 NEW FEATURES o Export the function cellDistance. Changes in version 1.3.5 IMPROVEMENT o Multiprocess for cellClusters. Changes in version 1.3.4 NEW FEATURES o Add function cellClusters. Changes in version 1.3.2 BUG FIXES o Move all geos into a sub properties in tjviewer. Changes in version 1.3.1 NEW FEATURES o Add hide/show button for each element in tjviewer. Changes in version 1.1.11 NEW FEATURES o Add createTADGeometries function. Changes in version 1.1.10 NEW FEATURES o Add pointCluster. Changes in version 1.1.9 BUG FIXES o Fix multiple typos. Changes in version 1.1.8 BUG FIXES o Fix the issues "Uncaught SyntaxError: Expected ',' or ']' after array element in JSON" if data.frame is too big. Changes in version 1.1.7 BUG FIXES o Fix the issues of measurment marker do not rotate and unexpected resize window when export. Changes in version 1.1.6 BUG FIXES o Export pdf with visible layers only. Changes in version 1.1.5 NEW FEATURES o Add pdf exporter. Changes in version 1.1.4 BUG FIXES o Fix the input check issue in kabsch. Changes in version 1.1.3 BUG FIXES o Update email address. Changes in version 1.1.2 NEW FEATURES o Add resolution for view3dStructure. Changes in version 1.1.1 NEW FEATURES o Add autocomplete input for search key words. Changes in version 0.99.18 BUG FIXES o Fix the issue for measurements in threeJsViewer when the world matrix updated. Changes in version 0.99.17 NEW FEATURES o Add parameter genomicScoreRange parameter for create3dGenomicSignals. Changes in version 0.99.16 o Fix the error in mdsPlot: 'dims' must contain all (i,j) pairs Changes in version 0.99.15 BUG FIXES o Change the background color set. o Remove local version of CSS2DRenderer. Changes in version 0.99.14 NEW FEATURES o add measurement for threeJsViewer. Changes in version 0.99.13 NEW FEATURES o add switch for orthographic and perspective projection to camera. o add flip controller. Changes in version 0.99.12 NEW FEATURES o change OrbitControls to ArcballControls. Changes in version 0.99.11 BUG FIXES o Handle the error if NA values is in the GenoSig of create3dGenomicSignals. Changes in version 0.99.10 NEW FEATURES o Add title and subregion for threeJsViewer. Changes in version 0.99.9 NEW FEATURES o Add possible to export the GRanges object for mdsPlot. Changes in version 0.99.8 BUG FIXES o Fix the warning 'rgl.init' failed, running with 'rgl.useNULL = TRUE'. Changes in version 0.99.7 NEW FEATURES o Add `saveWidget` sample code to vignettes. Changes in version 0.99.6 NEW FEATURES o Add LICENSE items for threejs. o Add help page for the package itself. Changes in version 0.99.5 BUG FIXES o Fix the warning message in create3dGenomicSignals when calling mapply. Changes in version 0.99.4 NEW FEATURES o Add type 'polygon' to threeJsGeometry. Changes in version 0.99.3 NEW FEATURES o Add rotation slot to threeJsGeometry. Changes in version 0.99.2 NEW FEATURES o Fix a bug that color info is missing when create 3d geometries. o Update the documentation. Changes in version 0.99.0 NEW FEATURES o Prepare to submittion. Changes in version 0.0.25 BUG FIXES o simplify the documentation. Changes in version 0.0.24 NEW FEATURES o add more geometries for rglViewer. Changes in version 0.0.23 BUG FIXES o Fix multiple bugs. o Add multiple unit test. o Rewrite the plotInteractionData vignette. Changes in version 0.0.22 NEW FEATURES o Fix the code style. o Add multiple unit test. o export the create3dGenomicSignals function. Changes in version 0.0.21 NEW FEATURES o Add resize block for threeJsViewer. Changes in version 0.0.20 NEW FEATURES o Add unit test. Changes in version 0.0.19 NEW FEATURES o Add group adjust controller for threeJsViewer. o Add background color controller for threeJsViewer. o Make the controller dragable for threeJsViewer. o Add signalTransformFun for view3dStructure. Changes in version 0.0.18 NEW FEATURES o Add search by coordinates for threeJsViewer. Changes in version 0.0.17 NEW FEATURES o Add key control and linked OribitControl for threeJsViewer. Changes in version 0.0.16 NEW FEATURES o Add side by side comparison for threeJsViewer. Changes in version 0.0.15 NEW FEATURES o Add search box for threeJsViewer. Changes in version 0.0.14 BUG FIXES o Center the 3d plots. Changes in version 0.0.13 NEW FEATURES o update ATAC-seq signals to Genomic signals. Changes in version 0.0.12 NEW FEATURES o add plotScCells vignettes. Changes in version 0.0.11 BUG FIXES o fix the license issue. Changes in version 0.0.9 NEW FEATURES o add video exporter for tjviewer. Changes in version 0.0.8 NEW FEATURES o add view 3d cells. Changes in version 0.0.7 BUG FIXES o Change atacSig to segments for tjviewer. Changes in version 0.0.6 BUG FIXES o Fix the arrow direction for tjviewer. Changes in version 0.0.5 BUG FIXES o Rename the package. Changes in version 0.0.4 NEW FEATURES o Add a vignettes. Changes in version 0.0.3 NEW FEATURES o Add label geometry. Changes in version 0.0.2 NEW FEATURES o Add text geometry. Changes in version 0.0.1 NEW FEATURES o Init. o Create the htmlwidgets.