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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "genomation" in publications use:'
type: software
license: Artistic-2.0
title: 'genomation: Summary, annotation and visualization of genomic data'
version: 1.37.0
doi: 10.1093/bioinformatics/btu775
abstract: A package for summary and annotation of genomic intervals. Users can visualize
  and quantify genomic intervals over pre-defined functional regions, such as promoters,
  exons, introns, etc. The genomic intervals represent regions with a defined chromosome
  position, which may be associated with a score, such as aligned reads from HT-seq
  experiments, TF binding sites, methylation scores, etc. The package can use any
  tabular genomic feature data as long as it has minimal information on the locations
  of genomic intervals. In addition, It can use BAM or BigWig files as input.
authors:
- family-names: Akalin
  given-names: Altuna
  email: aakalin@gmail.com
- family-names: Franke
  given-names: Vedran
  email: vedran.franke@gmail.com
- family-names: Wreczycka
  given-names: Katarzyna
  email: katwre@gmail.com
preferred-citation:
  type: article
  title: 'genomation: a toolkit to summarize, annotate and visualize genomic intervals'
  authors:
  - family-names: Akalin
    given-names: Altuna
    email: aakalin@gmail.com
  - family-names: Franke
    given-names: Vedran
    email: vedran.franke@gmail.com
  - family-names: Vlahovicek
    given-names: Kristian
  - family-names: Mason
    given-names: Christopher
  - family-names: Schubeler
    given-names: Dirk
  year: '2014'
  journal: Bioinformatics
  doi: 10.1093/bioinformatics/btu775
  url: http://bioinformatics.oxfordjournals.org/content/early/2014/12/04/bioinformatics.btu775.long
repository: https://bioc.r-universe.dev
repository-code: https://github.com/BIMSBbioinfo/genomation
url: http://bioinformatics.mdc-berlin.de/genomation/
contact:
- family-names: Akalin
  given-names: Altuna
  email: aakalin@gmail.com
- family-names: Franke
  given-names: Vedran
  email: vedran.franke@gmail.com
- family-names: Wreczycka
  given-names: Katarzyna
  email: katwre@gmail.com