Package: genefu
Type: Package
Title: Computation of Gene Expression-Based Signatures in Breast Cancer
Version: 2.45.0
Date: 2021-11-27
Authors@R: c(
  person('Deena M.A. Gendoo', role='aut'), 
  person('Natchar Ratanasirigulchai', role='aut'), 
  person('Markus S. Schroeder', role='aut'), 
  person('Laia Pare', role='aut'), 
  person('Joel S Parker', role='aut'), 
  person('Aleix Prat', role='aut'),
  person('Nikta Feizi', role='ctb'),
  person('Christopher Eeles', role='ctb'),
  person('Jermiah Joseph', role='ctb'),
  person('Benjamin Haibe-Kains', email='benjamin.haibe.kains@utoronto.ca',
    role=c('aut', 'cre')))
Description: This package contains functions implementing various tasks
        usually required by gene expression analysis, especially in
        breast cancer studies: gene mapping between different
        microarray platforms, identification of molecular subtypes,
        implementation of published gene signatures, gene selection,
        and survival analysis.
biocViews: DifferentialExpression, GeneExpression, Visualization,
        Clustering, Classification
Depends: R (>= 4.1), survcomp, biomaRt, iC10, AIMS
Suggests: GeneMeta, breastCancerVDX, breastCancerMAINZ,
        breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT,
        breastCancerNKI, rmeta, Biobase, xtable, knitr, caret,
        survival, BiocStyle, magick, rmarkdown
Imports: amap, impute, mclust, limma, graphics, stats, utils,
        iC10TrainingData
VignetteBuilder: knitr
License: Artistic-2.0
Encoding: UTF-8
URL: http://www.pmgenomics.ca/bhklab/software/genefu
RoxygenNote: 7.3.2
Config/pak/sysreqs: libicu-dev libpng-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:35:18 UTC
RemoteUrl: https://github.com/bioc/genefu
RemoteRef: HEAD
RemoteSha: 09a9b1dc5243a3c506c7f2a79bd44e5506686895
NeedsCompilation: no
Packaged: 2026-07-03 11:27:37 UTC; root
Author: Deena M.A. Gendoo [aut],
  Natchar Ratanasirigulchai [aut],
  Markus S. Schroeder [aut],
  Laia Pare [aut],
  Joel S Parker [aut],
  Aleix Prat [aut],
  Nikta Feizi [ctb],
  Christopher Eeles [ctb],
  Jermiah Joseph [ctb],
  Benjamin Haibe-Kains [aut, cre]
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>