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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "geneRxCluster" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'geneRxCluster: gRx Differential Clustering'
version: 1.41.0
doi: 10.1093/bioinformatics/btu035
abstract: Detect Differential Clustering of Genomic Sites such as gene therapy integrations.
  The package provides some functions for exploring genomic insertion sites originating
  from two different sources. Possibly, the two sources are two different gene therapy
  vectors. Vectors are preferred that target sensitive regions less frequently, motivating
  the search for localized clusters of insertions and comparison of the clusters formed
  by integration of different vectors. Scan statistics allow the discovery of spatial
  differences in clustering and calculation of False Discovery Rates (FDRs) providing
  statistical methods for comparing retroviral vectors. A scan statistic for comparing
  two vectors using multiple window widths to detect clustering differentials and
  compute FDRs is implemented here.
authors:
- family-names: Berry
  given-names: Charles
  email: ccberry@ucsd.edu
preferred-citation:
  type: article
  title: Comparing DNA site clusters with Scan Statistics
  authors:
  - family-names: Berry
    given-names: Charles C.
  - family-names: Ocwieja
    given-names: Karen E.
  - family-names: Malani
    given-names: Nirvav
  - family-names: Bushman
    given-names: Frederic D.
  journal: Bioinformatics
  year: '2014'
  doi: 10.1093/bioinformatics/btu035
repository: https://bioc.r-universe.dev
date-released: '2013-02-13'
contact:
- family-names: Berry
  given-names: Charles
  email: ccberry@ucsd.edu