NEWS
geNetClassifier 1.27.1
geNetClassifier 1.15.0
- Update for compatibility with new R versions. The confusion matrix is now an object of class 'table'.
geNetClassifier 1.9.3
- Updated for compatibility with igraph 1.0
geNetClassifier 1.9
- Added CITATION
- GenesRanking help: How to create a GenesRanking object based on scores provided by another algorithm
- Several message and warning improvements
- Bugfix: 0 IQR filter now returns the original matrix
geNetClassifier 1.6.1
- Vignette update
- Added Spearman and Kendall correlations (argument correlationMethod)
geNetClassifier 1.6
NEW FEATURES
- No longer required to have the same number of samples per class
- plotExpressionProfiles can also plot boxplots
- Default lpThreshold changed from 0.75 to 0.95
- 'identify' added as argument to plotAssignments and plotExpressionProfiles
- plotNetwork now always returns the network list (invisible), argument 'returniGraphs' is no longer needed.
BUG FIXES
- Minor bugfixes when there are only two classes
geNetClassifier 1.3.1
NEW FEATURES
- plotAssignments: Optimized speed and changed background color to blue. Added argument pointSize.
- plotExpressionProfiles: Added argument sampleColors.
BUG FIXES
- Added RUnit and BiocGenerics to "Suggests" to avoid R CHECK warnings
- Import methods, ebarrays and emfit in namespace to avoid R CHECK warnings
- plot.GenesNetwork is now completelly equivalent to plotNetwork (same default arguments)
geNetClassifier 1.1.1
BUG FIXES
- plotDiscriminantPower now accepts feature names starting by number (i.e. affy probes)
geNetClassifier 1.0
NEW FEATURES