Package: gcatest
Title: Genotype Conditional Association TEST
Version: 2.13.0
Authors@R: c(
    person(given = "Wei",
	   family = "Hao",
	   role = "aut",
	   email = "whao@princeton.edu"),
    person(given = "Minsun",
	   family = "Song",
	   role = "aut"),
    person(given = "Alejandro",
	   family = "Ochoa",
	   role = c("aut", "cre"),
	   email = "alejandro.ochoa@duke.edu",
           comment = c(ORCID = "0000-0003-4928-3403")),
    person(given = "John D.",
           family = "Storey",
	   role = "aut",
	   email = "jstorey@princeton.edu",
           comment = c(ORCID = "0000-0001-5992-402X"))
    )
Encoding: UTF-8
LazyData: true
Description: GCAT is an association test for genome wide association
        studies that controls for population structure under a general
        class of trait models.  This test conditions on the trait,
        which makes it immune to confounding by unmodeled environmental
        factors.  Population structure is modeled via logistic factors,
        which are estimated using the `lfa` package.
Imports: methods, lfa
Depends: R (>= 4.0)
Suggests: knitr, rmarkdown, ggplot2, testthat, BEDMatrix, genio
VignetteBuilder: knitr
License: GPL (>= 3)
biocViews: SNP, DimensionReduction, PrincipalComponent,
        GenomeWideAssociation
BugReports: https://github.com/StoreyLab/gcatest/issues
URL: https://github.com/StoreyLab/gcatest
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Config/pak/sysreqs: libx11-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:00:59 UTC
RemoteUrl: https://github.com/bioc/gcatest
RemoteRef: HEAD
RemoteSha: d5181b61f07044840f96242b66a4560f6447136e
NeedsCompilation: no
Packaged: 2026-07-03 06:05:39 UTC; root
Author: Wei Hao [aut],
  Minsun Song [aut],
  Alejandro Ochoa [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4928-3403>),
  John D. Storey [aut] (ORCID: <https://orcid.org/0000-0001-5992-402X>)
Maintainer: Alejandro Ochoa <alejandro.ochoa@duke.edu>