To cite gatom in publications use:

  Mariia Emelianova, Anastasiia Gainullina, Nikolay Poperechnyi,
  Alexander Loboda, Maxim Artyomov, Alexey Sergushichev, Shiny GATOM:
  omics-based identification of regulated metabolic modules in atom
  transition networks, Nucleic Acids Research, Volume 50, Issue W1, 5
  July 2022, Pages W690-W696, https://doi.org/10.1093/nar/gkac427

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Shiny GATOM: omics-based identification of regulated metabolic modules in atom transition networks},
    author = {Mariia Emelianova and Anastasiia Gainullina and Nikolay Poperechnyi and Alexander Loboda and Maxim Artyomov and Alexey Sergushichev},
    journal = {Nucleic Acids Research},
    year = {2022},
    volume = {50},
    number = {W1},
    pages = {W690-W696},
    url = {https://doi.org/10.1093/nar/gkac427},
  }