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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "gatom" in publications use:'
type: software
license: MIT
title: 'gatom: Finding an Active Metabolic Module in Atom Transition Network'
version: 1.3.0
abstract: This package implements a metabolic network analysis pipeline to identify
  an active metabolic module based on high throughput data. The pipeline takes as
  input transcriptional and/or metabolic data and finds a metabolic subnetwork (module)
  most regulated between the two conditions of interest. The package further provides
  functions for module post-processing, annotation and visualization.
authors:
- family-names: Gainullina
  given-names: Anastasiia
- family-names: Emelianova
  given-names: Mariia
- family-names: Sergushichev
  given-names: Alexey
  email: alsergbox@gmail.com
preferred-citation:
  type: article
  title: 'Shiny GATOM: omics-based identification of regulated metabolic modules in
    atom transition networks'
  authors:
  - family-names: Emelianova
    given-names: Mariia
  - family-names: Gainullina
    given-names: Anastasiia
  - family-names: Poperechnyi
    given-names: Nikolay
  - family-names: Loboda
    given-names: Alexander
  - family-names: Artyomov
    given-names: Maxim
  - family-names: Sergushichev
    given-names: Alexey
    email: alsergbox@gmail.com
  journal: Nucleic Acids Research
  year: '2022'
  volume: '50'
  issue: W1
  url: https://doi.org/10.1093/nar/gkac427
  start: W690-W696
repository: https://bioc.r-universe.dev
repository-code: https://github.com/ctlab/gatom
url: https://github.com/ctlab/gatom/
contact:
- family-names: Sergushichev
  given-names: Alexey
  email: alsergbox@gmail.com