NEWS
gDNAx 1.10.0 (2026-04-27)
USER VISIBLE CHANGES
- Changed default useRMSK=TRUE to useRMSK=FALSE in gDNAdx().
BUG FIXES
- Fix in the calculations of the strandedness() function, and its corresponding unit tests.
gDNAx 1.6.0 (2025-04-14)
USER VISIBLE CHANGES
- Handling of metadata from non-model organisms has been improved. Thanks to discussions on the support site (https://support.bioconductor.org/p/9160897/) and GitHub (https://github.com/rcastelo/gDNAx/issues/5).
- Added more documentation to the output of the 'getDx()' method.
gDNAx 1.2.0 (2024-04-27)
USER VISIBLE CHANGES
- Prompt an error when a 0-byte BAM file is passed as an argument.
- Added a new filtering strategy based on stranded genomic windows that can be used when input RNA-seq data is stranded.
- gDNAx objects store now also strandedness estimated values.
- identifyStrandMode() has been deprecated in favor of strandedness().
- gDNAdx() can now automatically guess library layout and protocol.
- Added a new function gDNAtx() that performs filtering with the most common default strategy.
BUG FIXES
- Bug fix in the show method for gDNAx objects.
- Bug fix when the genome() getter on GAlignment* objects is not NA.
gDNAx 0.99.6 (2023-05-26)
USER VISIBLE CHANGES
- Submission of the first version to the Bioconductor project.