For use of the frma function, please cite:

McCall MN, Bolstad BM, and Irizarry RA (2010). Frozen Robust Multi-Array Analysis (fRMA), Biostatistics, 11(2):242-253.

For use of the barcode function, please cite:

McCall MN, Uppal K, Jaffee HA, Zilliox MJ, and Irizarry RA (2011). The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes, Nucleic Acids Research, 39:D1011-5.

For use of the GNUSE function, please cite:

McCall MN, Murakami PN, Lukk M, Huber W, Irizarry RA (2011). Assessing Affymetrix GeneChip Microarray Quality, BMC Bioinformatics, 12:137.

For use of the frma function with Gene ST and Exon ST arrays, please also cite:

McCall MN, Jaffee HA, Irizarry RA (2012). fRMA ST: Frozen robust multiarray analysis for Affymetrix Exon and Gene ST arrays, Bioinformatics, 28(23):3153-3154.

Corresponding BibTeX entries:

  @Article{,
    author = {Matthew N McCall and Benjamin M Bolstad and Rafael A
      Irizarry},
    title = {Frozen robust multiarray analysis (fRMA)},
    journal = {Biostatistics},
    volume = {11},
    number = {2},
    year = {2010},
    pages = {242--253},
    publisher = {Biometrika Trust},
  }

  @Article{,
    author = {Matthew N McCall and Karan Uppal and Harris A Jaffee and
      Michael J Zilliox and Rafael A Irizarry},
    title = {The Gene Expression Barcode: leveraging public data
      repositories to begin cataloging the human and murine
      transcriptomes},
    journal = {Nucleic Acids Research},
    volume = {39},
    number = {suppl 1},
    year = {2011},
    pages = {D1011--D1015},
    publisher = {Oxford Univ Press},
  }

  @Article{,
    author = {Matthew N McCall and Peter N Murakami and Margus Lukk and
      Wolfgang Huber and Rafael A Irizarry},
    title = {Assessing affymetrix GeneChip microarray quality},
    journal = {BMC Bioinformatics},
    volume = {12},
    number = {1},
    year = {2011},
    pages = {137},
    publisher = {BioMed Central Ltd},
  }

  @Article{,
    author = {Matthew N McCall and Harris A Jaffee and Rafael A
      Irizarry},
    title = {fRMA ST: Frozen robust multiarray analysis for Affymetrix
      Exon and Gene ST arrays},
    journal = {Bioinformatics},
    volume = {28},
    number = {23},
    year = {2012},
    pages = {3153-3154},
    publisher = {Oxford Univ Press},
  }