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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "flowcatchR" in publications use:'
type: software
license: BSD-3-Clause
title: 'flowcatchR: Tools to analyze in vivo microscopy imaging data focused on tracking
  flowing blood cells'
version: 1.39.0
doi: 10.18129/B9.bioc.flowcatchR
abstract: flowcatchR is a set of tools to analyze in vivo microscopy imaging data,
  focused on tracking flowing blood cells. It guides the steps from segmentation to
  calculation of features, filtering out particles not of interest, providing also
  a set of utilities to help checking the quality of the performed operations (e.g.
  how good the segmentation was). It allows investigating the issue of tracking flowing
  cells such as in blood vessels, to categorize the particles in flowing, rolling
  and adherent. This classification is applied in the study of phenomena such as hemostasis
  and study of thrombosis development. Moreover, flowcatchR presents an integrated
  workflow solution, based on the integration with a Shiny App and Jupyter notebooks,
  which is delivered alongside the package, and can enable fully reproducible bioimage
  analysis in the R environment.
authors:
- family-names: Marini
  given-names: Federico
  email: marinif@uni-mainz.de
  orcid: https://orcid.org/0000-0003-3252-7758
preferred-citation:
  type: manual
  title: 'flowcatchR: Tools to analyze in vivo microscopy imaging data focused on
    tracking flowing blood cells'
  authors:
  - family-names: Marini
    given-names: Federico
    email: marinif@uni-mainz.de
    orcid: https://orcid.org/0000-0003-3252-7758
  - family-names: Binder
    given-names: Harald
  year: '2018'
  url: http://bioconductor.org/packages/flowcatchR/
  doi: 10.18129/B9.bioc.flowcatchR
repository: https://bioc.r-universe.dev
repository-code: https://github.com/federicomarini/flowcatchR
url: https://federicomarini.github.io/flowcatchR/
date-released: '2023-04-20'
contact:
- family-names: Marini
  given-names: Federico
  email: marinif@uni-mainz.de
  orcid: https://orcid.org/0000-0003-3252-7758