Package: flowWorkspace
Type: Package
Version: 4.25.1
Title: Infrastructure for representing and interacting with gated and
        ungated cytometry data sets.
Date: 2011-06-10
Author: Greg Finak, Mike Jiang
Maintainer: Greg Finak <greg@ozette.com>, Mike Jiang <mike@ozette.com>
Description: This package is designed to facilitate comparison of
        automated gating methods against manual gating done in flowJo.
        This package allows you to import basic flowJo workspaces into
        BioConductor and replicate the gating from flowJo using the
        flowCore functionality. Gating hierarchies, groups of samples,
        compensation, and transformation are performed so that the
        output matches the flowJo analysis.
License: AGPL-3.0-only
License_restricts_use: no
LazyLoad: yes
Imports: Biobase, BiocGenerics (>= 0.59.5), cytolib (>= 2.13.1), XML,
        ggplot2, graph, graphics, grDevices, methods, stats, stats4,
        utils, RBGL, tools, Rgraphviz, data.table, dplyr, scales(>=
        1.3.0), matrixStats, RProtoBufLib, flowCore(>= 2.1.1),
        ncdfFlow(>= 2.25.4), DelayedArray, S4Vectors
Collate: 'cytoframe.R' 'cytoset.R' 'AllClasses.R' 'getStats.R'
        'GatingHierarchy_Methods.R' 'GatingSet_Methods.R'
        'GatingSetList_Methods.R' 'GatingSet_factors.R'
        'filterObject_Methods.R' 'add_Methods.R' 'copyNode.R' 'cpp11.R'
        'cytoset_factors.R' 'deprecated.R' 'flow_trans.R'
        'getDescendants.R' 'getSingleCellExpression.R' 'identifier.R'
        'load_fcs.R' 'load_gs.R' 'merge_GatingSet.R' 'merge_gslist.R'
        'moveNode.R' 'parse_transformer.R' 'setGate_Methods.R'
        'updateIndices.R' 'utils.R' 'zzz.R'
Suggests: testthat, flowWorkspaceData (>= 2.23.2), knitr, rmarkdown,
        ggcyto, parallel, CytoML, openCyto
LinkingTo: cpp11, BH(>= 1.62.0-1), RProtoBufLib(>= 1.99.4), cytolib (>=
        2.3.7),Rhdf5lib
VignetteBuilder: knitr
biocViews: ImmunoOncology, FlowCytometry, DataImport, Preprocessing,
        DataRepresentation
SystemRequirements: GNU make, C++17
Encoding: UTF-8
RoxygenNote: 7.3.3
Config/pak/sysreqs: make libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-27 20:50:29 UTC
RemoteUrl: https://github.com/bioc/flowWorkspace
RemoteRef: HEAD
RemoteSha: 510b28a41fccfd6f637ae940bd056aaf51eba26e
NeedsCompilation: yes
Packaged: 2026-06-23 15:33:06 UTC; root
Depends: R (>= 3.5.0)