Package: flowSpecs
Version: 1.27.0
Date: 2026-03-16
Type: Package
Title: Tools for processing of high-dimensional cytometry data
biocViews: Software,CellBasedAssays,DataRepresentation,ImmunoOncology,
        FlowCytometry,SingleCell,Visualization,Normalization,DataImport
Authors@R: person('Jakob', 'Theorell', email = "jakob.theorell@ki.se",
        role = c("aut", "cre"))
Description: This package is intended to fill the role of conventional
        cytometry pre-processing software, for spectral decomposition,
        transformation, visualization and cleanup, and to aid further
        downstream analyses, such as with DepecheR, by enabling
        transformation of flowFrames and flowSets to dataframes.
        Functions for flowCore-compliant automatic 1D-gating/filtering
        are in the pipe line. The package name has been chosen both as
        it will deal with spectral cytometry and as it will hopefully
        give the user a nice pair of spectacles through which to view
        their data.
BugReports: https://github.com/jtheorell/flowSpecs/issues
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.2
Depends: R (>= 4.3)
Imports: ggplot2 (>= 3.1.0), BiocGenerics (>= 0.30.0), BiocParallel (>=
        1.18.1), Biobase (>= 2.48.0), reshape2 (>= 1.4.3), flowCore (>=
        1.50.0), zoo (>= 1.8.6), stats (>= 3.6.0), methods (>= 3.6.0)
Suggests: testthat, knitr, rmarkdown, BiocStyle, DepecheR
VignetteBuilder: knitr
Config/pak/sysreqs: libicu-dev libssl-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:50:58 UTC
RemoteUrl: https://github.com/bioc/flowSpecs
RemoteRef: HEAD
RemoteSha: b4c6fc3938b8af4487b2df58a7779f7cf19793a0
NeedsCompilation: no
Packaged: 2026-07-12 05:54:04 UTC; root
Author: Jakob Theorell [aut, cre]
Maintainer: Jakob Theorell <jakob.theorell@ki.se>