Package: fishash
Title: Cell Hashing with One-Sided Fisher Test
Version: 0.99.5
Authors@R: 
    person("Jack", "Kamm", , "jackkamm@gmail.com", role = c("aut", "cre"))
Description: Assigns guide RNAs or other genetic perturbations to cells
        in single-cell sequencing experiments using a one-sided
        Fisher's exact test. Implements an iterative refitting
        procedure to mitigate Simpson's paradox, supports multiple
        false discovery rate correction methods (Benjamini-Hochberg,
        Benjamini-Yekutueli, and Guo & Sarkar 2020), and provides
        simulation utilities for benchmarking demultiplexing methods.
        Results are returned as SummarizedExperiment objects.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 8.0.0
biocViews: SingleCell, Sequencing, Preprocessing, StatisticalMethod
Imports: dplyr, extraDistr, ggplot2, Matrix, methods, nnet, patchwork,
        rlang, S4Vectors, SingleCellExperiment, SummarizedExperiment,
        sparseMatrixStats
Depends: R (>= 4.5.0)
LazyData: false
Suggests: BiocStyle, ComplexHeatmap, ggExtra, glmGamPoi, knitr,
        rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/jackkamm/fishash
BugReports: https://github.com/jackkamm/fishash/issues
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-09-28 21:54:08 UTC
RemoteUrl: https://github.com/bioc/fishash
RemoteRef: HEAD
RemoteSha: 5eabd3c5d93b08a8f54ad9803a17f235975a0c61
NeedsCompilation: no
Packaged: 2026-10-09 11:52:55 UTC; root
Author: Jack Kamm [aut, cre]
Maintainer: Jack Kamm <jackkamm@gmail.com>