NEWS

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fedup 0.99.7 (2021-04-24)

• added info to explain example data in README and vignettes

• made minor changes to exported function example comments

• plotFemap + parameterized several hard-coded variables

fedup 0.99.6 (2021-02-24)

• Updated package data script paths

fedup 0.99.5 (2021-02-24)

• Trimmed external data size

fedup 0.99.4 (2021-03-24)

• updated package datasets (geneSingle, geneDouble, geneMulti)

• created 3 vignettes to describe package implementation using each dataset

• runFedup + runs analysis on an input list rather than single test vector + fold enrichment calculation evaluates 0 for 0/0 instances + enriched pathways defined as fold enrichment ≥ 1 (instead of > 1)

• writeFemap + writes EM-formatted tables for list of fedup results

• plotFemap + implements tryCatch() to return NULL if Cytoscape is not running locally

• prepInput + new function to prepare input gene list

fedup 0.99.3 (2021-02-24)

• Updating R version dependency to 4.1

fedup 0.99.2 (2021-02-24)

• Untracking system files

fedup 0.99.1 (2021-02-23)

• Version bump

fedup 0.99.0 (2021-02-17)

• Submitted to Bioconductor