Package: fcScan
Type: Package
Title: fcScan for detecting clusters of coordinates with user defined
        options
Version: 1.27.0
biocViews: GenomeAnnotation, Clustering
Authors@R: c(
    person("Abdullah", "El-Kurdi", email="ak161@aub.edu.lb", role = c("aut")),
    person("Ghiwa", "khalil", email="gk39@aub.edu.lb", role=c("aut")),
    person("Georges", "Khazen" ,email="gkhazen@lau.edu.lb", role=c("ctb")),
    person("Pierre", "Khoueiry", email="pk17@aub.edu.lb", role=c("aut","cre")))
Maintainer: Pierre Khoueiry <pk17@aub.edu.lb> Abdullah El-Kurdi
 <ak161@aub.edu.lb>
Description: This package is used to detect combination of genomic
        coordinates falling within a user defined window size along
        with user defined overlap between identified neighboring
        clusters. It can be used for genomic data where the clusters
        are built on a specific chromosome or specific strand.
        Clustering can be performed with a "greedy" option allowing
        thus the presence of additional sites within the allowed window
        size.
License: Artistic-2.0
Encoding: UTF-8
Imports: stats, plyr, VariantAnnotation, SummarizedExperiment,
        rtracklayer, GenomicRanges, methods, IRanges, foreach,
        doParallel, parallel
VignetteBuilder: knitr
Suggests: RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
RoxygenNote: 6.1.0
Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:50:42 UTC
RemoteUrl: https://github.com/bioc/fcScan
RemoteRef: HEAD
RemoteSha: d0d8416dde7fff4ea2ecdfcc2a5aa8a13c097dfe
NeedsCompilation: no
Packaged: 2026-07-03 23:48:13 UTC; root
Author: Abdullah El-Kurdi [aut],
  Ghiwa khalil [aut],
  Georges Khazen [ctb],
  Pierre Khoueiry [aut, cre]