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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "fastseg" in publications use:'
type: software
license: LGPL-2.0-or-later
title: 'fastseg: fastseg - a fast segmentation algorithm'
version: 1.51.0
doi: 10.1093/nar/gks003
abstract: fastseg implements a very fast and efficient segmentation algorithm. It
  has similar functionality as DNACopy (Olshen and Venkatraman 2004), but is considerably
  faster and more flexible. fastseg can segment data from DNA microarrays and data
  from next generation sequencing for example to detect copy number segments. Further
  it can segment data from RNA microarrays like tiling arrays to identify transcripts.
  Most generally, it can segment data given as a matrix or as a vector. Various data
  formats can be used as input to fastseg like expression set objects for microarrays
  or GRanges for sequencing data. The segmentation criterion of fastseg is based on
  a statistical test in a Bayesian framework, namely the cyber t-test (Baldi 2001).
  The speed-up arises from the facts, that sampling is not necessary in for fastseg
  and that a dynamic programming approach is used for calculation of the segments'
  first and higher order moments.
authors:
- family-names: Klambauer
  given-names: Guenter
- family-names: Blume
  given-names: Alexander
  email: alex.gos90@gmail.com
preferred-citation:
  type: article
  title: 'cn.MOPS: Mixture of Poissons for Discovering Copy Number Variations in Next
    Generation Sequencing Data with a Low False Discovery Rate'
  authors:
  - family-names: Klambauer
    given-names: Guenter
  - family-names: Schwarzbauer
    given-names: Karin
  - family-names: Mayr
    given-names: Andreas
  - family-names: Mitterecker
    given-names: Andreas
  - family-names: Clevert
    given-names: Djork-Arne
  - family-names: Bodenhofer
    given-names: Ulrich
  - family-names: Hochreiter
    given-names: Sepp
  year: '2012'
  volume: '40'
  journal: Nucleic Acids Research
  doi: 10.1093/nar/gks003
  url: http://nar.oxfordjournals.org/content/40/9/e69.abstract
  start: e69
repository: https://bioc.r-universe.dev
url: http://www.bioinf.jku.at/software/fastseg/index.html
contact:
- family-names: Blume
  given-names: Alexander
  email: alex.gos90@gmail.com