NEWS

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exploreSE 0.99.18

• edited the example context, updates sources
• added a landing page with thumbnails and introduction
• added cross-identifier matching for the context lists
• accordingly, updated to the vignette and readme

exploreSE 0.99.17

• added example contexts
• updates to vignette and readme to reflect the example context

exploreSE 0.99.16

• bug fix in get.gos that ran code twice by accident

exploreSE 0.99.15

• fixed spelling and style in the vignette and README

exploreSE 0.99.14

• added a context tab to overlay specified context over the respective comparison
• bug fixes with regards to demo data and gene identifiers
• minor refactor for parsing of input lists

exploreSE 0.99.13

• adjusted alpha for the FC FC lpot to be inline with the rest of the visualisations
• added a toggle for log scale on the expression plots
• added to toggle to hide the text for gene driving enrichments in the enrichment plots

exploreSE 0.99.12

• adjusted the rendering of the DE table for better legibility
• excluded list columns as possible gene identifier columns

exploreSE 0.99.11

• fixed a bug with the PCA when demo data was loaded first.

exploreSE 0.99.10

• fixed a bug with the conditional data loading

exploreSE 0.99.9

• various bug fixes
• missed a version bump in both description and news

exploreSE 0.99.8

• put the data loading interface into a conditional, so that it only appears when no data is loaded

exploreSE 0.99.7

• removed messages and warnings from the readme and the vignette to increase legibility
• added a a=b line in the FC FC plot for visibility
• fixed an issue in the test suite caused by filtering not significant hits from the fc-fc plots
• fixed a bug where the gene selection did not update based on gene type
• added an overview table of the different DE comparisons where a given gene is considered DE in the bottom of the gene expression panel

exploreSE 0.99.6

• adjusted some things in the README and added a table below the FCFC plot
• fixed a bug where the results stored in the metadata as no data frames where not converted

exploreSE 0.99.5

• fixed R dependency in the description file

exploreSE 0.99.4

• fixed an error in the expression plots related to geom_violin() and the text aesthetic
• fixed an error with point coloring based on cutoffs in the volcano plot
• fixed various typos
• added installation instructions to the vignette
• removed unused code

exploreSE 0.99.3

• fixed build warning related to the use of shiny related functions

exploreSE 0.99.2

• Preparing for initial submission