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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "esATAC" in publications use:'
type: software
license: GPL-3.0-only
title: 'esATAC: An Easy-to-use Systematic pipeline for ATACseq data analysis'
version: 1.27.0
doi: 10.1093/bioinformatics/bty141
identifiers:
- type: doi
  value: 10.32614/CRAN.package.esATAC
abstract: This package provides a framework and complete preset pipeline for quantification
  and analysis of ATAC-seq Reads. It covers raw sequencing reads preprocessing (FASTQ
  files), reads alignment (Rbowtie2), aligned reads file operations (SAM, BAM, and
  BED files), peak calling (F-seq), genome annotations (Motif, GO, SNP analysis) and
  quality control report. The package is managed by dataflow graph. It is easy for
  user to pass variables seamlessly between processes and understand the workflow.
  Users can process FASTQ files through end-to-end preset pipeline which produces
  a pretty HTML report for quality control and preliminary statistical results, or
  customize workflow starting from any intermediate stages with esATAC functions easily
  and flexibly.
authors:
- family-names: Wei
  given-names: Zheng
  email: wzweizheng@qq.com
- family-names: Zhang
  given-names: Wei
preferred-citation:
  type: article
  title: 'esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis'
  authors:
  - family-names: Wei
    given-names: Zheng
    email: wzweizheng@qq.com
  - family-names: Zhang
    given-names: Wei
  - family-names: Fang
    given-names: Huan
  - family-names: Li
    given-names: Yanda
  - family-names: Wang
    given-names: Xiaowo
  journal: Bioinformatics
  year: '2018'
  doi: 10.1093/bioinformatics/bty141
repository: https://bioc.r-universe.dev
repository-code: https://github.com/wzthu/esATAC
commit: 150e5265bdb34703fcec13dda329bcc0c486d556
url: https://github.com/wzthu/esATAC
date-released: '2017-06-25'
contact:
- family-names: Wei
  given-names: Zheng
  email: wzweizheng@qq.com