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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "epistack" in publications use:'
type: software
license: MIT
title: 'epistack: Heatmaps of Stack Profiles from Epigenetic Signals'
version: 1.11.0
abstract: 'The epistack package main objective is the visualizations of stacks of
  genomic tracks (such as, but not restricted to, ChIP-seq, ATAC-seq, DNA methyation
  or genomic conservation data) centered at genomic regions of interest. epistack
  needs three different inputs: 1) a genomic score objects, such as ChIP-seq coverage
  or DNA methylation values, provided as a `GRanges` (easily obtained from `bigwig`
  or `bam` files). 2) a list of feature of interest, such as peaks or transcription
  start sites, provided as a `GRanges` (easily obtained from `gtf` or `bed` files).
  3) a score to sort the features, such as peak height or gene expression value.'
authors:
- family-names: Safia
  given-names: SACI
  email: safiasaci1995@gmail.com
- family-names: Guillaume
  given-names: DEVAILLY
  email: gdevailly@hotmail.com
preferred-citation:
  type: generic
  title: 'epistack: An R package to visualise stack profiles of epigenomic signals'
  authors:
  - family-names: Safia
    given-names: SACI
    email: safiasaci1995@gmail.com
  - family-names: Guillaume
    given-names: DEVAILLY
    email: gdevailly@hotmail.com
  journal: HAL
  year: '2021'
  issue: '03401251'
  url: https://hal.inrae.fr/hal-03401251
repository: https://bioc.r-universe.dev
repository-code: https://github.com/GenEpi-GenPhySE/epistack
url: https://github.com/GenEpi-GenPhySE/epistack
contact:
- family-names: Guillaume
  given-names: DEVAILLY
  email: gdevailly@hotmail.com