To cite package ‘epiregulon’ in publications use:

  Wlodarczyk T, Lun A, Wu D, Menon S, Toneyan S, Seidel K, Wang L, Tan
  J, Chen S, Keyes T, Chlebowski A, Guo Y, Metcalfe C, Hafner M, Siebel
  CW, Corces MR, Yauch R, Xie S, Yao X (2023). “Epiregulon: Inference
  of single-cell transcription factor activity to dissect mechanisms of
  lineage plasticity and drug response.” _bioRxiv_.
  doi:10.1101/2023.11.27.568955
  <https://doi.org/10.1101/2023.11.27.568955>,
  <https://www.biorxiv.org/content/early/2023/11/28/2023.11.27.568955>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Epiregulon: Inference of single-cell transcription factor activity to dissect mechanisms of lineage plasticity and drug response},
    author = {Tomasz Wlodarczyk and Aaron Lun and Diana Wu and Shreya Menon and Shushan Toneyan and Kerstin Seidel and Liang Wang and Jenille Tan and Shang-Yang Chen and Timothy Keyes and Aleksander Chlebowski and Yu Guo and Ciara Metcalfe and Marc Hafner and Christian W. Siebel and M. Ryan Corces and Robert Yauch and Shiqi Xie and Xiaosai Yao},
    journal = {bioRxiv},
    year = {2023},
    doi = {10.1101/2023.11.27.568955},
    url. = {https://www.biorxiv.org/content/early/2023/11/28/2023.11.27.568955},
  }