aggregateAcrossCells has been added, which is implemented in c++ and makes
run time for calculateP2G much shorter.addLogFC which adds log fold changes of gene expression to regulons and significance statistics for differential gene expressioncellNum argument to calculateP2G set by default to 100 (previously it was 200).pruneRegulon the check to the uniqueness of gene names has been added.Version number downgraded to 0.99.0 to meet Bioconductor requirements.
commit 12fabd3278b76711f4b2cbdcaca6794a918ffd83
addMotifScore function (human_pwms_v1, and mouse_pwms_v1) were replaced wih the new ones (human_pwms_v2, mouse_pwms_v2) which are up-to-date.BUG FIX
clusters vector provided to the addWeights and pruneRegulon functions is checked for the presence of NA values. If they are present the function stops preventing segmentation fault and session abortion.calculateP2G staring position of the gene has been corrected.