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cff-version: 1.2.0
message: 'To cite package "epiregulon.extra" in publications use:'
type: software
license: MIT
title: 'epiregulon.extra: Companion package to epiregulon with additional plotting,
  differential and graph functions'
version: 1.9.0
doi: 10.32614/CRAN.package.epiregulon.extra
abstract: Gene regulatory networks model the underlying gene regulation hierarchies
  that drive gene expression and observed phenotypes. Epiregulon infers TF activity
  in single cells by constructing a gene regulatory network (regulons). This is achieved
  through integration of scATAC-seq and scRNA-seq data and incorporation of public
  bulk TF ChIP-seq data. Links between regulatory elements and their target genes
  are established by computing correlations between chromatin accessibility and gene
  expressions.
authors:
- family-names: Yao
  given-names: Xiaosai
  email: xiaosai.yao@gmail.com
  orcid: https://orcid.org/0000-0001-9729-0726
- family-names: Włodarczyk
  given-names: Tomasz
  email: tomwlo@gmail.com
  orcid: https://orcid.org/0000-0003-1554-9699
- family-names: Keyes
  given-names: Timothy
  email: keyes.timothy@gmail.com
- family-names: Chen
  given-names: Shang-Yang
  email: sychen9584@gmail.com
repository: https://bioc.r-universe.dev
repository-code: https://github.com/xiaosaiyao/epiregulon.extra
commit: 193308f6ba484e749f07ab9ff74bbf6edfc5603d
url: https://github.com/xiaosaiyao/epiregulon.extra/
date-released: '2026-04-28'
contact:
- family-names: Yao
  given-names: Xiaosai
  email: xiaosai.yao@gmail.com
  orcid: https://orcid.org/0000-0001-9729-0726