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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "epimutacions" in publications use:'
type: software
license: MIT
title: 'epimutacions: Robust outlier identification for DNA methylation data'
version: 1.9.0
doi: 10.1080/15592294.2023.2230670
abstract: The package includes some statistical outlier detection methods for epimutations
  detection in DNA methylation data. The methods included in the package are MANOVA,
  Multivariate linear models, isolation forest, robust mahalanobis distance, quantile
  and beta. The methods compare a case sample with a suspected disease against a reference
  panel (composed of healthy individuals) to identify epimutations in the given case
  sample. It also contains functions to annotate and visualize the identified epimutations.
authors:
- family-names: Pelegri-Siso
  given-names: Dolors
  email: dolors.pelegri@isglobal.org
  orcid: https://orcid.org/0000-0002-5993-3003
- family-names: Gonzalez
  given-names: Juan R.
  email: juanr.gonzalez@isglobal.org
  orcid: https://orcid.org/0000-0003-3267-2146
- family-names: Ruiz-Arenas
  given-names: Carlos
  email: carlos.ruiza@upf.edu
  orcid: https://orcid.org/0000-0002-6014-3498
- family-names: Hernandez-Ferrer
  given-names: Carles
  email: carles.hernandez@cnag.crg.eu
  orcid: https://orcid.org/0000-0002-8029-7160
- family-names: Abarrategui
  given-names: Leire
  email: abarrategui.leire@gmail.com
  orcid: https://orcid.org/0000-0002-1175-038X
preferred-citation:
  type: article
  title: 'Epimutation detection in the clinical context: guidelines and a use case
    from a new Bioconductor package'
  authors:
  - name: Ruiz-Arenas
  - name: C.
  - name: Abarrategui
  - name: L.
  - name: Hernandez-Ferrer
  - name: Escribà-Montagut
  - name: X.
  - name: Pelegrí-Sisó
  - name: D.
  - name: Ryser-Welch
  - name: P.
  - name: Vrijheid
  - name: M.
  - name: Bustamante
  - name: Grazuleviciene
  - name: R.
  - name: Lepeule
  - name: J.
  - name: Mathai
  - name: Vafeiadi
  - name: Beltran
  - name: S.
  - name: Pérez-Jurado
  - family-names: A.
    given-names: L.
  - name: González
  - family-names: R.
    given-names: J.
  year: '2023'
  journal: Epigenetics
  doi: 10.1080/15592294.2023.2230670
  volume: '18'
  issue: '1'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/isglobal-brge/epimutacions
url: https://github.com/isglobal-brge/epimutacions
contact:
- family-names: Pelegri-Siso
  given-names: Dolors
  email: dolors.pelegri@isglobal.org
  orcid: https://orcid.org/0000-0002-5993-3003