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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "epidecodeR" in publications use:'
type: software
license: GPL-3.0-only
title: 'epidecodeR: epidecodeR: a functional exploration tool for epigenetic and epitranscriptomic
  regulation'
version: 1.13.0
abstract: epidecodeR is a package capable of analysing impact of degree of DNA/RNA
  epigenetic chemical modifications on dysregulation of genes or proteins. This package
  integrates chemical modification data generated from a host of epigenomic or epitranscriptomic
  techniques such as ChIP-seq, ATAC-seq, m6A-seq, etc. and dysregulated gene lists
  in the form of differential gene expression, ribosome occupancy or differential
  protein translation and identify impact of dysregulation of genes caused due to
  varying degrees of chemical modifications associated with the genes. epidecodeR
  generates cumulative distribution function (CDF) plots showing shifts in trend of
  overall log2FC between genes divided into groups based on the degree of modification
  associated with the genes. The tool also tests for significance of difference in
  log2FC between groups of genes.
authors:
- family-names: Joshi
  given-names: Kandarp
  email: kandarpbioinfo@gmail.com
- family-names: Ohtan Wang
  given-names: Dan
  email: ohtan@riken.jp
repository: https://bioc.r-universe.dev
repository-code: https://github.com/kandarpRJ/epidecodeR
url: https://epidecoder.shinyapps.io/shinyapp
contact:
- family-names: Joshi
  given-names: Kandarp
  email: kandarpbioinfo@gmail.com