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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "epialleleR" in publications use:'
type: software
license: Artistic-2.0
title: 'epialleleR: Fast, Epiallele-Aware Methylation Caller and Reporter'
version: 1.13.2
identifiers:
- type: doi
  value: 10.32614/CRAN.package.epialleleR
abstract: Epialleles are specific DNA methylation patterns that are mitotically and/or
  meiotically inherited. This package calls and reports cytosine methylation as well
  as frequencies of hypermethylated epialleles at the level of genomic regions or
  individual cytosines in next-generation sequencing data using binary alignment map
  (BAM) files as an input. Among other things, this package can also extract methylation
  patterns and assess allele specificity of methylation.
authors:
- family-names: Nikolaienko
  given-names: Oleksii
  email: oleksii.nikolaienko@gmail.com
  orcid: https://orcid.org/0000-0002-5910-4934
preferred-citation:
  type: article
  title: 'epialleleR: an R/Bioconductor package for sensitive allele-specific methylation
    analysis in NGS data'
  authors:
  - family-names: Nikolaienko
    given-names: Oleksii
    email: oleksii.nikolaienko@gmail.com
    orcid: https://orcid.org/0000-0002-5910-4934
  - family-names: Lønning
    given-names: Per Eystein
  - family-names: Knappskog
    given-names: Stian
  journal: GigaScience
  volume: '12'
  year: '2023'
  month: '10'
  url: https://doi.org/10.1093/gigascience/giad087
  start: giad087
repository: https://bioc.r-universe.dev
repository-code: https://github.com/BBCG/epialleleR
commit: cad3b47af75ac2c74aeafd5a58483a870109c522
url: https://github.com/BBCG/epialleleR
contact:
- family-names: Nikolaienko
  given-names: Oleksii
  email: oleksii.nikolaienko@gmail.com
  orcid: https://orcid.org/0000-0002-5910-4934