# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "epiRomics" in publications use:'
type: software
license: Artistic-2.0
title: 'epiRomics: Epigenomic Analysis Package Built for R (epiRomics)'
version: 1.1.0
doi: 10.1186/s12864-023-09293-6
identifiers:
- type: doi
  value: 10.32614/CRAN.package.epiRomics
abstract: Integrates various levels of epigenomic information, including ChIP-seq,
  histone modification, ATAC-seq, and RNA-seq data. Regulatory network analysis uses
  combinatory approaches to infer regions of significance, such as enhancers. Downstream
  analysis identifies co-occurrence of epigenomic data at regions of interest. Visualization
  functions display multi-track genomic views with signal overlays. Please contact
  <ammawla@ucdavis.edu> for suggestions, feedback, or bug reporting.
authors:
- family-names: Mawla
  given-names: Alex M.
  email: ammawla@ucdavis.edu
  orcid: https://orcid.org/0000-0003-0907-464X
- family-names: Huising
  given-names: Mark O.
  email: mhuising@ucdavis.edu
  orcid: https://orcid.org/0000-0002-6594-2205
preferred-citation:
  type: article
  title: Chromatin accessibility differences between alpha, beta, and delta cells
    identifies common and cell type-specific enhancers
  authors:
  - family-names: Mawla
    given-names: Alex M.
    email: ammawla@ucdavis.edu
    orcid: https://orcid.org/0000-0003-0907-464X
  - family-names: Meulen
    given-names: Talitha
    name-particle: van der
  - family-names: Huising
    given-names: Mark O.
    email: mhuising@ucdavis.edu
    orcid: https://orcid.org/0000-0002-6594-2205
  journal: BMC Genomics
  year: '2023'
  doi: 10.1186/s12864-023-09293-6
repository: https://bioc.r-universe.dev
repository-code: https://github.com/Huising-Lab/epiRomics
commit: 9e2708e0bdd1934dffc2554020555520d5835958
url: https://huising-lab.github.io/epiRomics/
date-released: '2026-04-28'
contact:
- family-names: Mawla
  given-names: Alex M.
  email: ammawla@ucdavis.edu
  orcid: https://orcid.org/0000-0003-0907-464X
references:
- type: article
  title: 'epiRomics: a multi-omics R package to identify and visualize enhancers'
  authors:
  - family-names: Mawla
    given-names: Alex M.
  - family-names: Huising
    given-names: Mark O.
  journal: bioRxiv
  year: '2021'
  doi: 10.1101/2021.08.19.456732