Package: enrichmet
Type: Package
Title: enrichmet: R package for Quick and Easy Pathway and Network
        Analyses in Metabolomics
Version: 0.99.18
Authors@R: 
    c(
        person("Yonatan", "Mekonnen", email = "yaayalew@gmail.com",
            role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-7430-9428")),
        person(given = "H. Lee Moffitt Cancer Center & Research Institute",
            role = "fnd",
            comment = "Grant number: P01CA250984")
    )
Description: Provides functions to perform metabolite-based pathway
        enrichment analysis using Fisher's exact test and MetSEA.
        Computes relative betweenness centrality (RBC) of input
        metabolites in a pathway-metabolite interaction network. The
        package generates visualizations including pathway dot plots,
        MetSEA plots, metabolite centrality plots, and network plots.
        It supports KEGG-based pathway inputs and generates exportable
        results.
License: AGPL-3 + file LICENSE
Encoding: UTF-8
URL: https://github.com/biodatalab/enrichmet
BugReports: https://github.com/biodatalab/enrichmet/issues
Depends: R (>= 4.5.0)
Imports: BiocFileCache, methods, circlize, ComplexHeatmap, curl,
        data.table, dplyr, fgsea, ggplot2, ggraph, ggrepel, igraph,
        limma, openxlsx, qvalue, rlang, scales, stats, stringr, tibble,
        tidyr, utils, SummarizedExperiment
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.2.0), withr
Config/testthat/edition: 3
VignetteBuilder: knitr
biocViews: Metabolomics, Pathways, Network, NetworkEnrichment, KEGG,
        Visualization
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libglpk-dev
        libicu-dev libpng-dev libxml2-dev libssl-dev perl zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-10-09 22:56:28 UTC
RemoteUrl: https://github.com/bioc/enrichmet
RemoteRef: HEAD
RemoteSha: 3141d808a3ce25660dfb0a6e4d2356cba929e0cd
NeedsCompilation: no
Packaged: 2026-11-03 23:42:30 UTC; root
Author: Yonatan Mekonnen [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7430-9428>),
  H. Lee Moffitt Cancer Center & Research Institute [fnd] (Grant number:
    P01CA250984)
Maintainer: Yonatan Mekonnen <yaayalew@gmail.com>