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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "enrichViewNet" in publications use:'
type: software
license: Artistic-2.0
title: 'enrichViewNet: From functional enrichment results to biological networks'
version: 1.3.0
abstract: This package enables the visualization of functional enrichment results
  as network graphs. First the package enables the visualization of enrichment results,
  in a format corresponding to the one generated by gprofiler2, as a customizable
  Cytoscape network. In those networks, both gene datasets (GO terms/pathways/protein
  complexes) and genes associated to the datasets are represented as nodes. While
  the edges connect each gene to its dataset(s). The package also provides the option
  to create enrichment maps from functional enrichment results. Enrichment maps enable
  the visualization of enriched terms into a network with edges connecting overlapping
  genes.
authors:
- family-names: Deschênes
  given-names: Astrid
  email: adeschen@hotmail.com
  orcid: https://orcid.org/0000-0001-7846-6749
- family-names: Belleau
  given-names: Pascal
  email: pascal_belleau@hotmail.com
  orcid: https://orcid.org/0000-0002-0802-1071
- family-names: Faure
  given-names: Robert L.
  email: robert.faure@crchudequebec.ulaval.ca
  orcid: https://orcid.org/0000-0003-1798-4723
- family-names: Fernandes
  given-names: Maria J.
  email: maria.fernandes@crchudequebec.ulaval.ca
  orcid: https://orcid.org/0000-0002-3973-025X
- family-names: Krasnitz
  given-names: Alexander
  email: krasnitz@cshl.edu
- family-names: Tuveson
  given-names: David A.
  email: dtuveson@cshl.edu
  orcid: https://orcid.org/0000-0002-8017-2712
repository: https://bioc.r-universe.dev
repository-code: https://github.com/adeschen/enrichViewNet
url: https://adeschen.github.io/enrichViewNet/
date-released: '2021-03-25'
contact:
- family-names: Deschênes
  given-names: Astrid
  email: adeschen@hotmail.com
  orcid: https://orcid.org/0000-0001-7846-6749