Package: emtdata
Title: An ExperimentHub Package for data sets with an Epithelial to
        Mesenchymal Transition (EMT)
Version: 1.21.0
Authors@R: c(
            person(given = "Malvika D.",
                   family = "Kharbanda",
                   role = c("aut", "cre"),
                   email = "kharbanda.m@wehi.edu.au",
                   comment = c(ORCID = "0000-0001-9726-3023")),
            person(given = "Chin Wee",
                   family = "Tan",
                   role = c("aut"),
                   email = "cwtan@wehi.edu.au",
                   comment = c(ORCID = "0000-0001-9695-7218")),
            person(given = "Dharmesh D.",
                   family = "Bhuva",
                   role = c("aut"),
                   email = "bhuva.d@wehi.edu.au",
                   comment = c(ORCID = "0000-0002-6398-9157"))
            )
Description: This package provides pre-processed RNA-seq data where the
        epithelial to mesenchymal transition was induced on cell lines.
        These data come from three publications Cursons et al. (2015),
        Cursons etl al. (2018) and Foroutan et al. (2017). In each of
        these publications, EMT was induces across multiple cell lines
        following treatment by TGFb among other stimulants. This data
        will be useful in determining the regulatory programs modified
        in order to achieve an EMT. Data were processed by the Davis
        laboratory in the Bioinformatics division at WEHI.
biocViews: ExperimentHub, Homo_sapiens_Data, RNASeqData, ExpressionData
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Depends: R (>= 4.1)
Imports: edgeR, ExperimentHub, SummarizedExperiment
Suggests: testthat (>= 3.0.0), stringr, plyr, prettydoc, BiocStyle,
        Homo.sapiens, RColorBrewer, rmarkdown, BiocFileCache, knitr
URL: https://github.com/DavisLaboratory/emtdata
BugReports: https://github.com/DavisLaboratory/emtdata/issues
NeedsCompilation: no
VignetteBuilder: knitr
Config/testthat/edition: 3
License: GPL-3
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:35:10 UTC
RemoteUrl: https://github.com/bioc/emtdata
RemoteRef: HEAD
RemoteSha: 48bda00c06b60f0cc8509218f3636a1e5c689dd2
Packaged: 2026-10-10 10:44:06 UTC; root
Author: Malvika D. Kharbanda [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9726-3023>),
  Chin Wee Tan [aut] (ORCID: <https://orcid.org/0000-0001-9695-7218>),
  Dharmesh D. Bhuva [aut] (ORCID:
    <https://orcid.org/0000-0002-6398-9157>)
Maintainer: Malvika D. Kharbanda <kharbanda.m@wehi.edu.au>