Package: eisaR Title: Exon-Intron Split Analysis (EISA) in R Version: 1.25.0 Authors@R: c(person("Michael", "Stadler", email = "michael.stadler@fmi.ch", role = c("aut", "cre")), person("Dimos", "Gaidatzis", email = "dimosthenis.gaidatzis@fmi.ch", role = "aut"), person("Lukas", "Burger", email = "lukas.burger@fmi.ch", role = "aut"), person("Charlotte", "Soneson", email = "charlotte.soneson@fmi.ch", role = "aut")) Description: Exon-intron split analysis (EISA) uses ordinary RNA-seq data to measure changes in mature RNA and pre-mRNA reads across different experimental conditions to quantify transcriptional and post-transcriptional regulation of gene expression. For details see Gaidatzis et al., Nat Biotechnol 2015. doi: 10.1038/nbt.3269. eisaR implements the major steps of EISA in R. Depends: R (>= 4.1) License: GPL-3 biocViews: Transcription, GeneExpression, GeneRegulation, FunctionalGenomics, Transcriptomics, Regression, RNASeq Encoding: UTF-8 Roxygen: list(markdown = TRUE) RoxygenNote: 7.3.1 Suggests: knitr, rmarkdown, testthat, BiocStyle, QuasR, Rbowtie, Rhisat2, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg38, ensembldb, AnnotationDbi, GenomicFeatures, txdbmaker, rtracklayer, withr VignetteBuilder: knitr Imports: graphics, stats, GenomicRanges, S4Vectors, IRanges, limma, edgeR (>= 4.0), methods, SummarizedExperiment, BiocGenerics, utils URL: https://github.com/fmicompbio/eisaR BugReports: https://github.com/fmicompbio/eisaR/issues Config/pak/sysreqs: zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:52:05 UTC RemoteUrl: https://github.com/bioc/eisaR RemoteRef: HEAD RemoteSha: 939131c9258887133e733741652c681a45e71d1a NeedsCompilation: no Packaged: 2026-06-19 07:26:09 UTC; root Author: Michael Stadler [aut, cre], Dimos Gaidatzis [aut], Lukas Burger [aut], Charlotte Soneson [aut] Maintainer: Michael Stadler