Package: easylift
Title: An R package to perform genomic liftover
Version: 1.11.0
Date: 2023-10-24
Authors@R: 
    c(
    person("Abdullah", "Al Nahid", email= "abdnahid56@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-4390-0768")),
    person("Hervé", "Pagès", role = c("aut", "rev")),
    person("Michael", "Love", email = "michaelisaiahlove@gmail.com", role = c("aut", "rev"), comment = c(ORCID = "0000-0001-8401-0545"))
    )
Description: The easylift package provides a convenient tool for
        genomic liftover operations between different genome
        assemblies. It seamlessly works with Bioconductor's GRanges
        objects and chain files from the UCSC Genome Browser, allowing
        for straightforward handling of genomic ranges across various
        genome versions. One noteworthy feature of easylift is its
        integration with the BiocFileCache package. This integration
        automates the management and caching of chain files necessary
        for liftover operations. Users no longer need to manually
        specify chain file paths in their function calls, reducing the
        complexity of the liftover process.
License: MIT + file LICENSE
URL: https://github.com/nahid18/easylift,
        https://nahid18.github.io/easylift
BugReports: https://github.com/nahid18/easylift/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: R (>= 4.1.0), GenomicRanges, BiocFileCache
Imports: rtracklayer, GenomeInfoDb, R.utils, tools, methods
Suggests: testthat (>= 3.0.0), IRanges, knitr, BiocStyle, rmarkdown
Config/testthat/edition: 3
VignetteBuilder: knitr
biocViews: Software, WorkflowStep, Sequencing, Coverage,
        GenomeAssembly, DataImport
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:01:28 UTC
RemoteUrl: https://github.com/bioc/easylift
RemoteRef: HEAD
RemoteSha: 5953e13cd2fa2bf8d531bb009d69a4f1f02c126a
NeedsCompilation: no
Packaged: 2026-07-04 23:03:38 UTC; root
Author: Abdullah Al Nahid [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4390-0768>),
  Hervé Pagès [aut, rev],
  Michael Love [aut, rev] (ORCID:
    <https://orcid.org/0000-0001-8401-0545>)
Maintainer: Abdullah Al Nahid <abdnahid56@gmail.com>