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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "dyebias" in publications use:'
type: software
license: GPL-3.0-only
title: 'dyebias: The GASSCO method for correcting for slide-dependent gene-specific
  dye bias'
version: 1.65.0
doi: 10.1038/msb.2009.21
abstract: Many two-colour hybridizations suffer from a dye bias that is both gene-specific
  and slide-specific. The former depends on the content of the nucleotide used for
  labeling; the latter depends on the labeling percentage. The slide-dependency was
  hitherto not recognized, and made addressing the artefact impossible. Given a reasonable
  number of dye-swapped pairs of hybridizations, or of same vs. same hybridizations,
  both the gene- and slide-biases can be estimated and corrected using the GASSCO
  method (Margaritis et al., Mol. Sys. Biol. 5:266 (2009), doi:10.1038/msb.2009.21)
authors:
- family-names: Lijnzaad
  given-names: Philip
  email: plijnzaad@gmail.com
- family-names: Margaritis
  given-names: Thanasis
preferred-citation:
  type: article
  title: Adaptable gene-specific dye bias correction for two-channel DNA microarrays
  authors:
  - family-names: Margaritis
    given-names: T.
  - family-names: Lijnzaad
    given-names: P.
  - family-names: Leenen
    given-names: D.
    name-particle: van
  - family-names: Bouwmeester
    given-names: D.
  - family-names: Kemmeren
    given-names: P.
  - family-names: Hooff
    given-names: S.R.
    name-particle: van
  - family-names: Holstege
    given-names: F.C.P.
  year: '2009'
  journal: Molecular Systems Biology
  volume: '5'
  doi: 10.1038/msb.2009.21
  start: '266'
repository: https://bioc.r-universe.dev
url: http://www.holstegelab.nl/publications/margaritis_lijnzaad
contact:
- family-names: Lijnzaad
  given-names: Philip
  email: plijnzaad@gmail.com