Cherry C, Maestas D, Han J, Andorko J, Cahan P, Fertig E, Garmire L, Elisseeff J (2021). “Computational reconstruction of the signalling networks surrounding implanted biomaterials from single-cell transcriptomics.” Nature Biomedical Engineering, 5(10), 1228-1238. doi:10.1038/s41551-021-00770-5.

Mitchell J, Stapleton O, Krishnan K, Nagaraj S, Lvovs D, Cherry C, Poissonnier A, Horton W, Adey A, Rao V, Huff A, Zimmerman J, Kagohara L, Zaidi N, Coussens L, Jaffee E, Elisseeff J, Fertig E (2026). “Differential cell signaling testing for cell-cell communication inference from single-cell data by dominoSignal.” Bioinformatics, 42(3). doi:10.1093/bioinformatics/btag089.

Cherry C, Mitchell J, Nagaraj S, Krishnan K, Lvovs D, Fertig E, Elisseeff J (2026). dominoSignal: Cell Communication Analysis for Single Cell RNA Sequencing. R package version 1.7.1, https://bioconductor.org/packages/dominoSignal.

Corresponding BibTeX entries:

  @Article{,
    title = {Computational reconstruction of the signalling networks
      surrounding implanted biomaterials from single-cell
      transcriptomics},
    author = {Christopher Cherry and David R. Maestas and Jin Han and
      James I. Andorko and Patrick Cahan and Elana J. Fertig and Lana
      X. Garmire and Jennifer H. Elisseeff},
    journal = {Nature Biomedical Engineering},
    year = {2021},
    volume = {5},
    number = {10},
    pages = {1228-1238},
    doi = {10.1038/s41551-021-00770-5},
  }

  @Article{,
    title = {Differential cell signaling testing for cell-cell
      communication inference from single-cell data by dominoSignal},
    author = {Jacob T Mitchell and Orian Stapleton and Kavita Krishnan
      and Sushma Nagaraj and Dmitrijs Lvovs and Christopher Cherry and
      Amanda Poissonnier and Wesley Horton and Andrew Adey and Varun
      Rao and Amanda Huff and Jacquelyn W Zimmerman and Luciane T
      Kagohara and Neeha Zaidi and Lisa M Coussens and Elizabeth M
      Jaffee and Jennifer H Elisseeff and Elana J Fertig},
    journal = {Bioinformatics},
    year = {2026},
    volume = {42},
    number = {3},
    doi = {10.1093/bioinformatics/btag089},
  }

  @Manual{,
    title = {dominoSignal: Cell Communication Analysis for Single Cell
      RNA Sequencing},
    author = {Christopher Cherry and Jacob T Mitchell and Sushma
      Nagaraj and Kavita Krishnan and Dmitrijs Lvovs and Elana Fertig
      and Jennifer Elisseeff},
    year = {2026},
    note = {R package version 1.7.1},
    url = {https://bioconductor.org/packages/dominoSignal},
  }