| Title: | Datasets for R Package dominatR |
|---|---|
| Description: | dominatRData is a data package useful for showcasing dominatR examples. dominatR is an R package for quantifying and visualizing feature dominance in datasets. dominatR makes use of entropy-based triangular projections and compositional comparison metrics. |
| Authors: | Simon Lizarazo [aut, cre] (ORCID: <https://orcid.org/0009-0001-8974-6225>), Ethan Chen [ctb], Rajendra K C [ctb], Kevin Van Bortle [ctb] |
| Maintainer: | Simon Lizarazo <[email protected]> |
| License: | MIT + file LICENSE |
| Version: | 1.1.0 |
| Built: | 2026-10-10 10:44:38 UTC |
| Source: | https://github.com/bioc/dominatRData |
A list of tissues and the corresponding counts for RNA POL3 genes for each of them.
data('atac_tissue_counts')data('atac_tissue_counts')
A dataframe with 9817 rows and 26 variables:
Category for genes based on their expression across tissues
Chromosome where the RNA of interest is located
Gene start coordinate
Gene end coordinate
Gene name
Unique RNA Sequence identifier - Can be retrieved from RNA Central
Type of RNA POL3 Transcript
Remaining columns contain the name of different assessed tissues
Created by The VanBortle lab at UIUC to serve as an example
Simon Lizarazo et al., 2025 bioRxiv Preprint
A list of tissues and the corresponding counts for RNA POL3 genes for each of them. Values represent a binary call on significance for accessibility. If the value is 1 the gene is accessible in the respective tissue.
data('atac_tissue_score')data('atac_tissue_score')
A dataframe with 9817 rows and 23 variables:
Category for genes based on their expression across tissues
Chromosome where the RNA of interest is located
Gene start coordinate
Gene end coordinate
Gene name
Unique RNA Sequence identifier - Can be retrieved from RNA Central
Type of RNA POL3 Transcript
Remaining columns contain the name of different assessed tissues
Created by The VanBortle lab at UIUC to serve as an example
Simon Lizarazo et al., 2025 bioRxiv Preprint
A subset of data obtained from CHIP-Seq Data for RNA Polymerase I, II and III
data('rnapol_counts')data('rnapol_counts')
A dataframe with 1061 rows and 7 variables:
Chromosome where the gene is located
Gene start coordinate
Gene stop coordinate
Type of transcript
Raw counts for RNA Polymerase I Chip-Seq
Raw counts for RNA Polymerase II Chip-Seq
Raw counts for RNA Polymerase III Chip-Seq
Created by The VanBortle lab at UIUC to serve as an example
Rajendra K C et al., 2024 Molecular Cell
A subset of data obtained from CHIP-Seq Data for RNA Polymerase I, II and III. Values are represented as the -log10(p-value)
data('rnapol_score')data('rnapol_score')
A dataframe with 1061 rows and 7 variables:
Chromosome where the gene is located
Gene start coordinate
Gene stop coordinate
Type of transcript
Score for RNA Polymerase I Chip-Seq
Score for RNA Polymerase II Chip-Seq
Score for RNA Polymerase III Chip-Seq
Created by The VanBortle lab at UIUC to serve as an example
Rajendra K C et al., 2024 Molecular Cell