# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "dittoSeq" in publications use:'
type: software
license: MIT
title: 'dittoSeq: User Friendly Single-Cell and Bulk RNA Sequencing Visualization'
version: 1.17.0
doi: 10.1093/bioinformatics/btaa1011
abstract: A universal, user friendly, single-cell and bulk RNA sequencing visualization
  toolkit that allows highly customizable creation of color blindness friendly, publication-quality
  figures. dittoSeq accepts both SingleCellExperiment (SCE) and Seurat objects, as
  well as the import and usage, via conversion to an SCE, of SummarizedExperiment
  or DGEList bulk data. Visualizations include dimensionality reduction plots, heatmaps,
  scatterplots, percent composition or expression across groups, and more. Customizations
  range from size and title adjustments to automatic generation of annotations for
  heatmaps, overlay of trajectory analysis onto any dimensionality reduciton plot,
  hidden data overlay upon cursor hovering via ggplotly conversion, and many more.
  All with simple, discrete inputs. Color blindness friendliness is powered by legend
  adjustments (enlarged keys), and by allowing the use of shapes or letter-overlay
  in addition to the carefully selected dittoColors().
authors:
- family-names: Bunis
  given-names: Daniel
  email: daniel.bunis@ucsf.edu
- family-names: Andrews
  given-names: Jared
  email: jared.andrews07@gmail.com
preferred-citation:
  type: article
  title: 'dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization
    toolkit'
  authors:
  - family-names: Bunis
    given-names: Daniel G.
  - family-names: Andrews
    given-names: Jared
    email: jared.andrews07@gmail.com
  - family-names: Fragiadakis
    given-names: Gabriela K.
  - family-names: Burt
    given-names: Trevor D.
  - family-names: Sirota
    given-names: Marina
  journal: Bioinformatics
  issue: 22-23
  year: '2020'
  month: '12'
  doi: 10.1093/bioinformatics/btaa1011
  start: 5535-5536
repository: https://bioc.r-universe.dev
contact:
- family-names: Bunis
  given-names: Daniel
  email: daniel.bunis@ucsf.edu