# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "dinoR" in publications use:'
type: software
license: MIT
title: 'dinoR: Differential NOMe-seq analysis'
version: 1.3.0
doi: 10.32614/CRAN.package.dinoR
abstract: dinoR tests for significant differences in NOMe-seq footprints between two
  conditions, using genomic regions of interest (ROI) centered around a landmark,
  for example a transcription factor (TF) motif. This package takes NOMe-seq data
  (GCH methylation/protection) in the form of a Ranged Summarized Experiment as input.
  dinoR can be used to group sequencing fragments into 3 or 5 categories representing
  characteristic footprints (TF bound, nculeosome bound, open chromatin), plot the
  percentage of fragments in each category in a heatmap, or averaged across different
  ROI groups, for example, containing a common TF motif. It is designed to compare
  footprints between two sample groups, using edgeR's quasi-likelihood methods on
  the total fragment counts per ROI, sample, and footprint category.
authors:
- family-names: Schwaiger
  given-names: Michaela
  email: michaela.schwaiger@fmi.ch
  orcid: https://orcid.org/0000-0002-4522-7810
repository: https://bioc.r-universe.dev
repository-code: https://github.com/xxxmichixxx/dinoR
commit: eaf277e1358a4096fd0e809e765675155cd329f4
url: https://github.com/xxxmichixxx/dinoR
contact:
- family-names: Schwaiger
  given-names: Michaela
  email: michaela.schwaiger@fmi.ch
  orcid: https://orcid.org/0000-0002-4522-7810