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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "diffuStats" in publications use:'
type: software
license: GPL-3.0-only
title: 'diffuStats: Diffusion scores on biological networks'
version: 1.25.0
doi: 10.1093/bioinformatics/btx632
abstract: Label propagation approaches are a widely used procedure in computational
  biology for giving context to molecular entities using network data. Node labels,
  which can derive from gene expression, genome-wide association studies, protein
  domains or metabolomics profiling, are propagated to their neighbours in the network,
  effectively smoothing the scores through prior annotated knowledge and prioritising
  novel candidates. The R package diffuStats contains a collection of diffusion kernels
  and scoring approaches that facilitates their computation, characterisation and
  benchmarking.
authors:
- family-names: Picart-Armada
  given-names: Sergio
  email: sergi.picart@upc.edu
- family-names: Perera-Lluna
  given-names: Alexandre
  email: alexandre.perera@upc.edu
preferred-citation:
  type: article
  title: 'diffuStats: an R package to compute diffusion-based scores on biological
    networks'
  authors:
  - family-names: Picart-Armada
    given-names: Sergio
    email: sergi.picart@upc.edu
  - family-names: Thompson
    given-names: Wesley K
  - family-names: Buil
    given-names: Alfonso
  - family-names: Perera-Lluna
    given-names: Alexandre
    email: alexandre.perera@upc.edu
  journal: Bioinformatics
  volume: '34'
  issue: '3'
  year: '2017'
  doi: 10.1093/bioinformatics/btx632
  start: '533'
  end: '534'
repository: https://bioc.r-universe.dev
contact:
- family-names: Picart-Armada
  given-names: Sergio
  email: sergi.picart@upc.edu
references:
- type: article
  title: The effect of statistical normalisation on network propagation scores
  authors:
  - family-names: Picart-Armada
    given-names: Sergio
  - family-names: Thompson
    given-names: Wesley K
  - family-names: Buil
    given-names: Alfonso
  - family-names: Perera-Lluna
    given-names: Alexandre
  journal: Bioinformatics
  year: '2020'
  doi: 10.1093/bioinformatics/btaa896