Package: derfinderPlot
Type: Package
Title: Plotting functions for derfinder
Version: 1.47.0
Date: 2025-07-26
Authors@R: c(person("Leonardo", "Collado-Torres", role = c("aut", "cre"), email
    = "lcolladotor@gmail.com", comment = c(ORCID = "0000-0003-2140-308X")),
    person(c("Andrew", "E."), "Jaffe", role = "aut",
    email = "andrew.jaffe@libd.org", comment = c(ORCID = "0000-0001-6886-1454")),
    person(c("Jeffrey", "T."), "Leek", role = c("aut", "ths"),
    email = "jtleek@gmail.com", comment = c(ORCID = "0000-0002-2873-2671")))
Depends: R(>= 3.2)
Imports: derfinder (>= 1.1.0), Seqinfo, GenomeInfoDb (>= 1.45.9),
        GenomicFeatures, GenomicRanges (>= 1.17.40), ggbio (>=
        1.13.13), ggplot2, graphics, grDevices, IRanges (>= 1.99.28),
        limma, methods, plyr, RColorBrewer, reshape2, S4Vectors (>=
        0.9.38), scales, utils
Suggests: biovizBase (>= 1.27.2), bumphunter (>= 1.7.6), derfinderData
        (>= 0.99.0), sessioninfo, knitr (>= 1.6), BiocStyle (>=
        2.5.19), org.Hs.eg.db, RefManageR, rmarkdown (>= 0.3.3),
        testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, covr
VignetteBuilder: knitr
Description: This package provides plotting functions for results from
        the derfinder package. This helps separate the graphical
        dependencies required for making these plots from the core
        functionality of derfinder.
License: Artistic-2.0
URL: https://github.com/leekgroup/derfinderPlot
BugReports: https://support.bioconductor.org/t/derfinderPlot
biocViews: DifferentialExpression, Sequencing, RNASeq, Software,
        Visualization, ImmunoOncology
RoxygenNote: 7.3.2
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libpng-dev libuv1-dev libxml2-dev libssl-dev xz-utils
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:39:51 UTC
RemoteUrl: https://github.com/bioc/derfinderPlot
RemoteRef: HEAD
RemoteSha: 3e8a612ad8d4a437529eaf5e2cf6966f8307d654
NeedsCompilation: no
Packaged: 2026-07-19 05:12:38 UTC; root
Author: Leonardo Collado-Torres [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2140-308X>),
  Andrew E. Jaffe [aut] (ORCID: <https://orcid.org/0000-0001-6886-1454>),
  Jeffrey T. Leek [aut, ths] (ORCID:
    <https://orcid.org/0000-0002-2873-2671>)
Maintainer: Leonardo Collado-Torres <lcolladotor@gmail.com>