Package: demuxSNP Title: scRNAseq demultiplexing using cell hashing and SNPs Version: 1.11.0 Authors@R: c( person("Michael", "Lynch", email = "michael.lynch@ul.ie", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-9535-6461")), person("Aedin", "Culhane", email = "aedin.culhane@ul.ie", role = c("aut"), comment = c(ORCID = "0000-0002-1395-9734"))) Description: This package assists in demultiplexing scRNAseq data using both cell hashing and SNPs data. The SNP profile of each group os learned using high confidence assignments from the cell hashing data. Cells which cannot be assigned with high confidence from the cell hashing data are assigned to their most similar group based on their SNPs. We also provide some helper function to optimise SNP selection, create training data and merge SNP data into the SingleCellExperiment framework. URL: https://github.com/michaelplynch/demuxSNP BugReports: https://github.com/michaelplynch/demuxSNP/issues License: GPL-3 Encoding: UTF-8 Roxygen: list(markdown = TRUE) RoxygenNote: 7.3.2 Depends: R (>= 4.3.0), SingleCellExperiment, VariantAnnotation, ensembldb Imports: MatrixGenerics, BiocGenerics, class, Seqinfo, IRanges, Matrix, SummarizedExperiment, demuxmix, methods, KernelKnn, dplyr Suggests: knitr, rmarkdown, ComplexHeatmap, viridisLite, ggpubr, dittoSeq, EnsDb.Hsapiens.v86, BiocStyle, RefManageR, testthat (>= 3.0.0), Seurat biocViews: Classification, SingleCell VignetteBuilder: knitr LazyData: false Config/testthat/edition: 3 Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 13:00:55 UTC RemoteUrl: https://github.com/bioc/demuxSNP RemoteRef: HEAD RemoteSha: b893e6de7aebfbd7d5132ccf2d7f1f4cefedfea9 NeedsCompilation: no Packaged: 2026-07-03 16:42:35 UTC; root Author: Michael Lynch [aut, cre] (ORCID: ), Aedin Culhane [aut] (ORCID: ) Maintainer: Michael Lynch