Package: deltaCaptureC
Title: This Package Discovers Meso-scale Chromatin Remodeling from 3C
        Data
Version: 1.27.0
Authors@R: 
    person(given = "Michael",
           family = "Shapiro",
           role = c("aut", "cre"),
           email = "michael.shapiro@crick.ac.uk",
           comment = c(ORCID = "0000-0002-2769-9320"))
Description: This package discovers meso-scale chromatin remodelling
        from 3C data.  3C data is local in nature.  It givens
        interaction counts between restriction enzyme digestion
        fragments and a preferred 'viewpoint' region.  By binning this
        data and using permutation testing, this package can test
        whether there are statistically significant changes in the
        interaction counts between the data from two cell types or two
        treatments.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.6)
Imports: IRanges, GenomicRanges, SummarizedExperiment, ggplot2, DESeq2,
        tictoc
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3.9000
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: BiologicalQuestion, StatisticalMethod
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:50:50 UTC
RemoteUrl: https://github.com/bioc/deltaCaptureC
RemoteRef: HEAD
RemoteSha: 0d56b65b9f037db9b5fa64312bcdcfcc698cef28
NeedsCompilation: no
Packaged: 2026-07-03 22:00:12 UTC; root
Author: Michael Shapiro [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2769-9320>)
Maintainer: Michael Shapiro <michael.shapiro@crick.ac.uk>