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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "decontX" in publications use:'
type: software
license: MIT
title: 'decontX: Decontamination of single cell genomics data'
version: 1.3.0
abstract: This package contains implementation of DecontX (Yang et al. 2020), a decontamination
  algorithm for single-cell RNA-seq, and DecontPro (Yin et al. 2023), a decontamination
  algorithm for single cell protein expression data. DecontX is a novel Bayesian method
  to computationally estimate and remove RNA contamination in individual cells without
  empty droplet information. DecontPro is a Bayesian method that estimates the level
  of contamination from ambient and background sources in CITE-seq ADT dataset and
  decontaminate the dataset.
authors:
- family-names: Yin
  given-names: Yuan
  email: yuan_yin@outlook.com
  orcid: https://orcid.org/0000-0001-9261-6061
- family-names: Yajima
  given-names: Masanao
  email: yajima@bu.edu
  orcid: https://orcid.org/0000-0002-7583-3707
- family-names: Campbell
  given-names: Joshua
  email: camp@bu.edu
  orcid: https://orcid.org/0000-0003-0780-8662
repository: https://bioc.r-universe.dev
contact:
- family-names: Yin
  given-names: Yuan
  email: yuan_yin@outlook.com
  orcid: https://orcid.org/0000-0001-9261-6061