Package: debrowser
Type: Package
Title: Interactive Differential Expresion Analysis Browser
Version: 1.41.2
Date: 2026-07-23
Authors@R: c(
    person("Alper", "Kucukural",
           email = "alper.kucukural@umassmed.edu",
           role = c("aut", "cre")),
    person("Onur", "Yukselen",
           email = "onur.yukselen@umassmed.edu",
           role = "aut"),
    person("Manuel", "Garber",
           email = "manuel.garber@umassmed.edu",
           role = "aut"))
Description: Bioinformatics platform containing interactive plots and
        tables for differential gene and region expression studies.
        Allows visualizing expression data much more deeply in an
        interactive and faster way. By changing the parameters, users
        can easily discover different parts of the data that like never
        have been done before. Manually creating and looking these
        plots takes time. With DEBrowser users can prepare plots
        without writing any code. Differential expression, PCA and
        clustering analysis are made on site and the results are shown
        in various plots such as scatter, bar, box, volcano, ma plots
        and Heatmaps.
Depends: R (>= 4.2.0),
License: GPL-3 + file LICENSE
Imports: shiny, jsonlite, shinyjs, shinyBS, shinyWidgets, gplots, DT,
        ggplot2, annotate, AnnotationDbi, DESeq2, igraph, grDevices,
        graphics, stats, utils, GenomicRanges, IRanges, S4Vectors,
        SummarizedExperiment, stringi, reshape2, org.Hs.eg.db, limma,
        edgeR, clusterProfiler, methods, sva, RCurl, colourpicker,
        plotly, heatmaply, bslib (>= 0.7.0), htmltools
RoxygenNote: 8.0.0
Encoding: UTF-8
Suggests: testthat (>= 3.2.0), rmarkdown, RSQLite, knitr, digest,
        shinymanager (>= 1.0.4), shinytest2, chromote, DBI, Harman,
        pathview, org.Mm.eg.db, apeglm, ashr, commonmark, enrichplot,
        fgsea, ipaddress (>= 1.0), mockery, msigdbr, openssl, scrypt,
        UpSetR, DOSE, ellmer (>= 0.1.0), keyring, whisker, withr, xml2
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/UMMS-Biocore/debrowser,
        https://debrowser.readthedocs.io
BugReports: https://github.com/UMMS-Biocore/debrowser/issues/new
biocViews: Sequencing, ChIPSeq, RNASeq, DifferentialExpression,
        GeneExpression, Clustering, ImmunoOncology
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libmagick++-dev gsfonts
        libicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-23 18:20:13 UTC
RemoteUrl: https://github.com/bioc/debrowser
RemoteRef: HEAD
RemoteSha: f1190cd970fa9d26b27f8300a0a0a21d83bdf682
NeedsCompilation: no
Packaged: 2026-07-25 09:26:24 UTC; root
Author: Alper Kucukural [aut, cre],
  Onur Yukselen [aut],
  Manuel Garber [aut]
Maintainer: Alper Kucukural <alper.kucukural@umassmed.edu>