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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "dearseq" in publications use:'
type: software
license: GPL-2.0-only
title: 'dearseq: Differential Expression Analysis for RNA-seq data through a robust
  variance component test'
version: 1.17.0
doi: 10.1093/nargab/lqaa093
identifiers:
- type: doi
  value: 10.32614/CRAN.package.dearseq
abstract: 'Differential Expression Analysis RNA-seq data with variance component score
  test accounting for data heteroscedasticity through precision weights. Perform both
  gene-wise and gene set analyses, and can deal with repeated or longitudinal data.
  Methods are detailed in: i) Agniel D & Hejblum BP (2017) Variance component score
  test for time-course gene set analysis of longitudinal RNA-seq data, Biostatistics,
  18(4):589-604 ; and ii) Gauthier M, Agniel D, Thiébaut R & Hejblum BP (2020) dearseq:
  a variance component score test for RNA-Seq differential analysis that effectively
  controls the false discovery rate, NAR Genomics and Bioinformatics, 2(4):lqaa093.'
authors:
- family-names: Agniel
  given-names: Denis
  email: denis.agniel@gmail.com
- family-names: Hejblum
  given-names: Boris P.
  email: boris.hejblum@u-bordeaux.fr
  orcid: https://orcid.org/0000-0003-0646-452X
- family-names: Gauthier
  given-names: Marine
  email: marine.gauthier@u-bordeaux.fr
preferred-citation:
  type: article
  title: 'dearseq: a variance component score test for RNA-Seq differential analysis
    that effectively controls the false discovery rate'
  authors:
  - name: Marine Gauthier
  - name: Denis Agniel
  - name: Rodolphe Thiebaut
  - name: Boris P Hejblum
  journal: NAR Genomics and Bioinformatics
  year: '2020'
  volume: '2'
  issue: '4'
  doi: 10.1093/nargab/lqaa093
  url: https://doi.org/10.1093/nargab/lqaa093
  start: lqaa093
repository: https://bioc.r-universe.dev
repository-code: https://github.com/borishejblum/dearseq
commit: 07913161c7d754e4f17143fafeed19838605349a
url: https://github.com/borishejblum/dearseq
date-released: '2023-06-16'
contact:
- family-names: Hejblum
  given-names: Boris P.
  email: boris.hejblum@u-bordeaux.fr
  orcid: https://orcid.org/0000-0003-0646-452X